3-mers GCA 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.000158894

Neutral set average density: 0.011448

Different set average density: 0.0122696

Presence of motif

           motif_present
gene_set    absent present
  different      5     989
  neutral       10    1943

Fisher's exact test: p=1

Binomial GLM: p=0.974063

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-3.2534   0.1004   0.1013   0.1013   0.1013  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    5.26940    0.31704  16.621   <2e-16 ***
differentTRUE  0.01785    0.54911   0.033    0.974    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 188.34  on 2946  degrees of freedom
Residual deviance: 188.34  on 2945  degrees of freedom
AIC: 192.34

Number of Fisher Scoring iterations: 8