3-mers GCA 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.707726

Neutral set average density: 0.00542755

Different set average density: 0.00527163

Presence of motif

           motif_present
gene_set    absent present
  different    771     223
  neutral     1488     465

Fisher's exact test: p=0.433706

Binomial GLM: p=0.404243

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.7375  -0.7375  -0.7375  -0.7128   1.7289  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.16315    0.05313 -21.893   <2e-16 ***
differentTRUE -0.07737    0.09276  -0.834    0.404    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3202.9  on 2946  degrees of freedom
Residual deviance: 3202.2  on 2945  degrees of freedom
AIC: 3206.2

Number of Fisher Scoring iterations: 4