3-mers GCC 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.654446

Neutral set average density: 0.00429083

Different set average density: 0.00412475

Presence of motif

           motif_present
gene_set    absent present
  different    814     180
  neutral     1596     357

Fisher's exact test: p=0.919703

Binomial GLM: p=0.909524

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.6354  -0.6354  -0.6354  -0.6321   1.8487  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.49752    0.05855 -25.578   <2e-16 ***
differentTRUE -0.01148    0.10105  -0.114     0.91    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2798.1  on 2946  degrees of freedom
Residual deviance: 2798.1  on 2945  degrees of freedom
AIC: 2802.1

Number of Fisher Scoring iterations: 4