3-mers GCG 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.850554

Neutral set average density: 0.00178187

Different set average density: 0.00183099

Presence of motif

           motif_present
gene_set    absent present
  different    915      79
  neutral     1797     156

Fisher's exact test: p=1

Binomial GLM: p=0.96975

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
   Min      1Q  Median      3Q     Max  
-0.408  -0.408  -0.408  -0.407   2.250  

Coefficients:
               Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -2.444018   0.083467 -29.281   <2e-16 ***
differentTRUE -0.005458   0.143937  -0.038     0.97    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 1639.4  on 2946  degrees of freedom
Residual deviance: 1639.4  on 2945  degrees of freedom
AIC: 1643.4

Number of Fisher Scoring iterations: 5