3-mers GCU 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.572626

Neutral set average density: 0.0123195

Different set average density: 0.0124567

Presence of motif

           motif_present
gene_set    absent present
  different      9     985
  neutral       13    1940

Fisher's exact test: p=0.500723

Binomial GLM: p=0.47632

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-3.1661   0.1156   0.1156   0.1349   0.1349  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)     5.0055     0.2782  17.990   <2e-16 ***
differentTRUE  -0.3101     0.4354  -0.712    0.476    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 259.33  on 2946  degrees of freedom
Residual deviance: 258.83  on 2945  degrees of freedom
AIC: 262.83

Number of Fisher Scoring iterations: 7