3-mers GCU 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.604439

Neutral set average density: 0.00654378

Different set average density: 0.00678068

Presence of motif

           motif_present
gene_set    absent present
  different    715     279
  neutral     1407     546

Fisher's exact test: p=0.965397

Binomial GLM: p=0.949213

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.8117  -0.8098  -0.8098   1.5941   1.5966  

Coefficients:
               Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.946596   0.050421 -18.774   <2e-16 ***
differentTRUE  0.005525   0.086747   0.064    0.949    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3494.6  on 2946  degrees of freedom
Residual deviance: 3494.6  on 2945  degrees of freedom
AIC: 3498.6

Number of Fisher Scoring iterations: 4