3-mers GGA 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.249877

Neutral set average density: 0.00572453

Different set average density: 0.00523139

Presence of motif

           motif_present
gene_set    absent present
  different    775     219
  neutral     1490     463

Fisher's exact test: p=0.332019

Binomial GLM: p=0.308155

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.7357  -0.7357  -0.7357  -0.7055   1.7393  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.16880    0.05321 -21.967   <2e-16 ***
differentTRUE -0.09499    0.09321  -1.019    0.308    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3188.6  on 2946  degrees of freedom
Residual deviance: 3187.5  on 2945  degrees of freedom
AIC: 3191.5

Number of Fisher Scoring iterations: 4