3-mers GGA 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.255826

Neutral set average density: 0.00430108

Different set average density: 0.0038833

Presence of motif

           motif_present
gene_set    absent present
  different    828     166
  neutral     1584     369

Fisher's exact test: p=0.156983

Binomial GLM: p=0.144323

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.6472  -0.6472  -0.6472  -0.6045   1.8920  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -1.4569     0.0578  -25.20   <2e-16 ***
differentTRUE  -0.1501     0.1028   -1.46    0.144    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2792.1  on 2946  degrees of freedom
Residual deviance: 2790.0  on 2945  degrees of freedom
AIC: 2794

Number of Fisher Scoring iterations: 4