3-mers GGC 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.497749

Neutral set average density: 0.00289811

Different set average density: 0.00269618

Presence of motif

           motif_present
gene_set    absent present
  different    869     125
  neutral     1705     248

Fisher's exact test: p=0.953314

Binomial GLM: p=0.924382

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.5212  -0.5212  -0.5212  -0.5184   2.0364  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.92789    0.06796 -28.367   <2e-16 ***
differentTRUE -0.01114    0.11734  -0.095    0.924    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2238.6  on 2946  degrees of freedom
Residual deviance: 2238.6  on 2945  degrees of freedom
AIC: 2242.6

Number of Fisher Scoring iterations: 4