3-mers GGC 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.719397

Neutral set average density: 0.00672299

Different set average density: 0.00678471

Presence of motif

           motif_present
gene_set    absent present
  different     41     953
  neutral      114    1839

Fisher's exact test: p=0.0545804

Binomial GLM: p=0.0500431

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-2.5251   0.2903   0.3468   0.3468   0.3468  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    2.78078    0.09652   28.81   <2e-16 ***
differentTRUE  0.36526    0.18640    1.96     0.05 .  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 1214.7  on 2946  degrees of freedom
Residual deviance: 1210.7  on 2945  degrees of freedom
AIC: 1214.7

Number of Fisher Scoring iterations: 5