3-mers GGC 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.811643

Neutral set average density: 0.00177163

Different set average density: 0.00183099

Presence of motif

           motif_present
gene_set    absent present
  different    909      85
  neutral     1797     156

Fisher's exact test: p=0.618862

Binomial GLM: p=0.597654

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.4228  -0.4228  -0.4080  -0.4080   2.2482  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -2.44402    0.08347 -29.281   <2e-16 ***
differentTRUE  0.07432    0.14082   0.528    0.598    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 1668.5  on 2946  degrees of freedom
Residual deviance: 1668.3  on 2945  degrees of freedom
AIC: 1672.3

Number of Fisher Scoring iterations: 5