3-mers GGU 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.0224385

Neutral set average density: 0.00408602

Different set average density: 0.00334004

Presence of motif

           motif_present
gene_set    absent present
  different    839     155
  neutral     1588     365

Fisher's exact test: p=0.040848

Binomial GLM: p=0.0373758

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.6433  -0.6433  -0.6433  -0.5823   1.9279  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.47033    0.05805 -25.330   <2e-16 ***
differentTRUE -0.21845    0.10494  -2.082   0.0374 *  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2746.4  on 2946  degrees of freedom
Residual deviance: 2742.0  on 2945  degrees of freedom
AIC: 2746

Number of Fisher Scoring iterations: 4