3-mers GUA 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.464267

Neutral set average density: 0.0102611

Different set average density: 0.0106841

Presence of motif

           motif_present
gene_set    absent present
  different    590     404
  neutral     1179     774

Fisher's exact test: p=0.605261

Binomial GLM: p=0.595759

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
   Min      1Q  Median      3Q     Max  
-1.021  -1.005  -1.005   1.361   1.361  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.42085    0.04626  -9.097   <2e-16 ***
differentTRUE  0.04214    0.07944   0.531    0.596    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3966.1  on 2946  degrees of freedom
Residual deviance: 3965.8  on 2945  degrees of freedom
AIC: 3969.8

Number of Fisher Scoring iterations: 4