3-mers GUC 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.0116973

Neutral set average density: 0.00986994

Different set average density: 0.0103682

Presence of motif

           motif_present
gene_set    absent present
  different      8     986
  neutral       20    1933

Fisher's exact test: p=0.689356

Binomial GLM: p=0.56282

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-3.1056   0.1271   0.1435   0.1435   0.1435  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)     4.5711     0.2248  20.338   <2e-16 ***
differentTRUE   0.2431     0.4201   0.579    0.563    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 316.49  on 2946  degrees of freedom
Residual deviance: 316.14  on 2945  degrees of freedom
AIC: 320.14

Number of Fisher Scoring iterations: 7