3-mers GUC 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.04382

Neutral set average density: 0.00575525

Different set average density: 0.00665996

Presence of motif

           motif_present
gene_set    absent present
  different    719     275
  neutral     1466     487

Fisher's exact test: p=0.119361

Binomial GLM: p=0.109677

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.8048  -0.7574  -0.7574   1.6031   1.6666  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.10203    0.05230  -21.07   <2e-16 ***
differentTRUE  0.14094    0.08811    1.60     0.11    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3368.7  on 2946  degrees of freedom
Residual deviance: 3366.2  on 2945  degrees of freedom
AIC: 3370.2

Number of Fisher Scoring iterations: 4