3-mers GUG 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.0210446

Neutral set average density: 0.00560164

Different set average density: 0.00462777

Presence of motif

           motif_present
gene_set    absent present
  different    799     195
  neutral     1503     450

Fisher's exact test: p=0.0340507

Binomial GLM: p=0.03374

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.7238  -0.7238  -0.7238  -0.6609   1.8049  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.20597    0.05374 -22.443   <2e-16 ***
differentTRUE -0.20439    0.09627  -2.123   0.0337 *  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3097.1  on 2946  degrees of freedom
Residual deviance: 3092.5  on 2945  degrees of freedom
AIC: 3096.5

Number of Fisher Scoring iterations: 4