3-mers GUG 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.381527

Neutral set average density: 0.0109227

Different set average density: 0.0107264

Presence of motif

           motif_present
gene_set    absent present
  different     15     979
  neutral       27    1926

Fisher's exact test: p=0.869586

Binomial GLM: p=0.784101

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-2.9262   0.1669   0.1669   0.1744   0.1744  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    4.26736    0.19379  22.020   <2e-16 ***
differentTRUE -0.08888    0.32441  -0.274    0.784    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 440.47  on 2946  degrees of freedom
Residual deviance: 440.40  on 2945  degrees of freedom
AIC: 444.4

Number of Fisher Scoring iterations: 7