3-mers GUG 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.926153

Neutral set average density: 0.00697389

Different set average density: 0.00702213

Presence of motif

           motif_present
gene_set    absent present
  different    726     268
  neutral     1407     546

Fisher's exact test: p=0.601099

Binomial GLM: p=0.567832

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.8098  -0.8098  -0.7927   1.5966   1.6191  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.94660    0.05042 -18.774   <2e-16 ***
differentTRUE -0.04997    0.08747  -0.571    0.568    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3473.6  on 2946  degrees of freedom
Residual deviance: 3473.2  on 2945  degrees of freedom
AIC: 3477.2

Number of Fisher Scoring iterations: 4