3-mers GUU 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.532008

Neutral set average density: 0.0165284

Different set average density: 0.0169618

Presence of motif

           motif_present
gene_set    absent present
  different    411     583
  neutral      865    1088

Fisher's exact test: p=0.135158

Binomial GLM: p=0.12751

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
   Min      1Q  Median      3Q     Max  
-1.329  -1.276   1.033   1.082   1.082  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    0.22937    0.04555   5.035 4.78e-07 ***
differentTRUE  0.12023    0.07889   1.524    0.128    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 4032.3  on 2946  degrees of freedom
Residual deviance: 4030.0  on 2945  degrees of freedom
AIC: 4034

Number of Fisher Scoring iterations: 4