3-mers UAG 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.0103959

Neutral set average density: 0.00777266

Different set average density: 0.00655936

Presence of motif

           motif_present
gene_set    absent present
  different    719     275
  neutral     1343     610

Fisher's exact test: p=0.0459076

Binomial GLM: p=0.0458624

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.8654  -0.8654  -0.8048   1.5256   1.6031  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.78920    0.04883 -16.164   <2e-16 ***
differentTRUE -0.17189    0.08609  -1.997   0.0459 *  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3602.0  on 2946  degrees of freedom
Residual deviance: 3597.9  on 2945  degrees of freedom
AIC: 3601.9

Number of Fisher Scoring iterations: 4