3-mers UAU 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.330747

Neutral set average density: 0.0255914

Different set average density: 0.0265392

Presence of motif

           motif_present
gene_set    absent present
  different    304     690
  neutral      629    1324

Fisher's exact test: p=0.379328

Binomial GLM: p=0.370443

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.5393  -1.5053   0.8545   0.8817   0.8817  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    0.74428    0.04843  15.369   <2e-16 ***
differentTRUE  0.07538    0.08417   0.896     0.37    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3679.5  on 2946  degrees of freedom
Residual deviance: 3678.7  on 2945  degrees of freedom
AIC: 3682.7

Number of Fisher Scoring iterations: 4