3-mers UAU 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.0328562

Neutral set average density: 0.0341833

Different set average density: 0.0367002

Presence of motif

           motif_present
gene_set    absent present
  different    205     789
  neutral      421    1532

Fisher's exact test: p=0.567981

Binomial GLM: p=0.558341

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.7769   0.6797   0.6968   0.6968   0.6968  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    1.29170    0.05503  23.474   <2e-16 ***
differentTRUE  0.05606    0.09578   0.585    0.558    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3048.1  on 2946  degrees of freedom
Residual deviance: 3047.7  on 2945  degrees of freedom
AIC: 3051.7

Number of Fisher Scoring iterations: 4