3-mers UCC 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.383332

Neutral set average density: 0.0124834

Different set average density: 0.0130382

Presence of motif

           motif_present
gene_set    absent present
  different    517     477
  neutral     1067     886

Fisher's exact test: p=0.184078

Binomial GLM: p=0.177203

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
   Min      1Q  Median      3Q     Max  
-1.143  -1.100  -1.100   1.257   1.257  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.18589    0.04545  -4.090 4.32e-05 ***
differentTRUE  0.10536    0.07808   1.349    0.177    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 4068.8  on 2946  degrees of freedom
Residual deviance: 4067.0  on 2945  degrees of freedom
AIC: 4071

Number of Fisher Scoring iterations: 3