3-mers UCC 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.998862

Neutral set average density: 0.013276

Different set average density: 0.0132757

Presence of motif

           motif_present
gene_set    absent present
  different      2     992
  neutral        6    1947

Fisher's exact test: p=0.724951

Binomial GLM: p=0.603722

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-3.5238   0.0635   0.0784   0.0784   0.0784  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)     5.7823     0.4089  14.142   <2e-16 ***
differentTRUE   0.4243     0.8174   0.519    0.604    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 110.52  on 2946  degrees of freedom
Residual deviance: 110.24  on 2945  degrees of freedom
AIC: 114.24

Number of Fisher Scoring iterations: 9