3-mers UGA 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=5.47637e-12

Neutral set average density: 0.0178187

Different set average density: 0.013159

Presence of motif

           motif_present
gene_set    absent present
  different    522     472
  neutral      810    1143

Fisher's exact test: p=1.34501e-08

Binomial GLM: p=1.36173e-08

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
   Min      1Q  Median      3Q     Max  
-1.327  -1.327   1.035   1.035   1.220  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    0.34438    0.04593   7.498 6.48e-14 ***
differentTRUE -0.44507    0.07838  -5.678 1.36e-08 ***
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 4058.2  on 2946  degrees of freedom
Residual deviance: 4025.8  on 2945  degrees of freedom
AIC: 4029.8

Number of Fisher Scoring iterations: 4