3-mers UGC 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.0654266

Neutral set average density: 0.00775218

Different set average density: 0.00688129

Presence of motif

           motif_present
gene_set    absent present
  different    704     290
  neutral     1340     613

Fisher's exact test: p=0.220715

Binomial GLM: p=0.218111

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.8680  -0.8680  -0.8306   1.5223   1.5696  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.78206    0.04876 -16.039   <2e-16 ***
differentTRUE -0.10484    0.08513  -1.232    0.218    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3631.9  on 2946  degrees of freedom
Residual deviance: 3630.4  on 2945  degrees of freedom
AIC: 3634.4

Number of Fisher Scoring iterations: 4