3-mers UGC 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.361892

Neutral set average density: 0.0127435

Different set average density: 0.0129638

Presence of motif

           motif_present
gene_set    absent present
  different      3     991
  neutral       11    1942

Fisher's exact test: p=0.407208

Binomial GLM: p=0.336949

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-3.4068   0.0778   0.1063   0.1063   0.1063  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)     5.1736     0.3024   17.11   <2e-16 ***
differentTRUE   0.6265     0.6525    0.96    0.337    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 177.72  on 2946  degrees of freedom
Residual deviance: 176.69  on 2945  degrees of freedom
AIC: 180.69

Number of Fisher Scoring iterations: 8