3-mers UGC 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.265968

Neutral set average density: 0.00864311

Different set average density: 0.00923541

Presence of motif

           motif_present
gene_set    absent present
  different    629     365
  neutral     1260     693

Fisher's exact test: p=0.515992

Binomial GLM: p=0.508289

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.9567  -0.9362  -0.9362   1.4155   1.4395  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.59784    0.04729 -12.641   <2e-16 ***
differentTRUE  0.05360    0.08103   0.662    0.508    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3847.9  on 2946  degrees of freedom
Residual deviance: 3847.4  on 2945  degrees of freedom
AIC: 3851.4

Number of Fisher Scoring iterations: 4