3-mers UGG 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.00124079

Neutral set average density: 0.00499744

Different set average density: 0.0037827

Presence of motif

           motif_present
gene_set    absent present
  different    829     165
  neutral     1538     415

Fisher's exact test: p=0.00277825

Binomial GLM: p=0.00274782

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.6912  -0.6912  -0.6912  -0.6025   1.8951  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.30996    0.05532 -23.681  < 2e-16 ***
differentTRUE -0.30432    0.10162  -2.995  0.00275 ** 
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2923.1  on 2946  degrees of freedom
Residual deviance: 2913.9  on 2945  degrees of freedom
AIC: 2917.9

Number of Fisher Scoring iterations: 4