3-mers UGG 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.188976

Neutral set average density: 0.0143728

Different set average density: 0.0140221

Presence of motif

           motif_present
gene_set    absent present
  different      0     994
  neutral        9    1944

Fisher's exact test: p=0.0333181

Binomial GLM: p=0.991028

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-3.2802   0.0000   0.0961   0.0961   0.0961  

Coefficients:
               Estimate Std. Error z value Pr(>|z|)    
(Intercept)      5.3753     0.3341  16.089   <2e-16 ***
differentTRUE   17.1908  1528.6889   0.011    0.991    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 122.22  on 2946  degrees of freedom
Residual deviance: 114.80  on 2945  degrees of freedom
AIC: 118.8

Number of Fisher Scoring iterations: 21