3-mers UGG 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.000288416

Neutral set average density: 0.0053149

Different set average density: 0.00396378

Presence of motif

           motif_present
gene_set    absent present
  different    817     177
  neutral     1512     441

Fisher's exact test: p=0.00256449

Binomial GLM: p=0.00267123

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.7155  -0.7155  -0.7155  -0.6263   1.8577  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.23214    0.05412 -22.767  < 2e-16 ***
differentTRUE -0.29735    0.09901  -3.003  0.00267 ** 
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3027.0  on 2946  degrees of freedom
Residual deviance: 3017.7  on 2945  degrees of freedom
AIC: 3021.7

Number of Fisher Scoring iterations: 4