3-mers UGU 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.119662

Neutral set average density: 0.0129749

Different set average density: 0.0119718

Presence of motif

           motif_present
gene_set    absent present
  different    568     426
  neutral     1067     886

Fisher's exact test: p=0.196124

Binomial GLM: p=0.19514

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
   Min      1Q  Median      3Q     Max  
-1.100  -1.100  -1.058   1.257   1.302  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.18589    0.04545  -4.090 4.32e-05 ***
differentTRUE -0.10179    0.07857  -1.296    0.195    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 4049.9  on 2946  degrees of freedom
Residual deviance: 4048.3  on 2945  degrees of freedom
AIC: 4052.3

Number of Fisher Scoring iterations: 3