3-mers UGU 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.0882678

Neutral set average density: 0.0277931

Different set average density: 0.0261368

Presence of motif

           motif_present
gene_set    absent present
  different    288     706
  neutral      554    1399

Fisher's exact test: p=0.730296

Binomial GLM: p=0.730108

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.5874  -1.5740   0.8168   0.8168   0.8272  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    0.92635    0.05020  18.454   <2e-16 ***
differentTRUE -0.02969    0.08607  -0.345     0.73    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3526.2  on 2946  degrees of freedom
Residual deviance: 3526.1  on 2945  degrees of freedom
AIC: 3530.1

Number of Fisher Scoring iterations: 4