3-mers UUA 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=9.74432e-05

Neutral set average density: 0.0172852

Different set average density: 0.0160926

Presence of motif

           motif_present
gene_set    absent present
  different      8     986
  neutral       12    1941

Fisher's exact test: p=0.63593

Binomial GLM: p=0.552919

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-3.1913   0.1110   0.1110   0.1271   0.1271  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)     5.0861     0.2896  17.564   <2e-16 ***
differentTRUE  -0.2718     0.4581  -0.593    0.553    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 239.58  on 2946  degrees of freedom
Residual deviance: 239.23  on 2945  degrees of freedom
AIC: 243.23

Number of Fisher Scoring iterations: 8