3-mers UUA 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.894621

Neutral set average density: 0.034808

Different set average density: 0.034668

Presence of motif

           motif_present
gene_set    absent present
  different    202     792
  neutral      359    1594

Fisher's exact test: p=0.214787

Binomial GLM: p=0.204872

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.8405   0.6374   0.6374   0.6741   0.6741  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    1.49068    0.05842  25.517   <2e-16 ***
differentTRUE -0.12439    0.09811  -1.268    0.205    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2868.9  on 2946  degrees of freedom
Residual deviance: 2867.3  on 2945  degrees of freedom
AIC: 2871.3

Number of Fisher Scoring iterations: 4