3-mers UUC 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=1.49468e-05

Neutral set average density: 0.0404199

Different set average density: 0.0449698

Presence of motif

           motif_present
gene_set    absent present
  different     91     903
  neutral      243    1710

Fisher's exact test: p=0.00815172

Binomial GLM: p=0.0079977

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-2.1867   0.4382   0.5155   0.5155   0.5155  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    1.95119    0.06856  28.461   <2e-16 ***
differentTRUE  0.34368    0.12958   2.652    0.008 ** 
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2083.1  on 2946  degrees of freedom
Residual deviance: 2075.8  on 2945  degrees of freedom
AIC: 2079.8

Number of Fisher Scoring iterations: 4