3-mers UUC 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=1.63831e-08

Neutral set average density: 0.0340911

Different set average density: 0.0400201

Presence of motif

           motif_present
gene_set    absent present
  different    129     865
  neutral      347    1606

Fisher's exact test: p=0.000838676

Binomial GLM: p=0.000875759

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-2.0208   0.5273   0.6255   0.6255   0.6255  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)     1.5322     0.0592  25.882  < 2e-16 ***
differentTRUE   0.3707     0.1114   3.328 0.000876 ***
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2606.2  on 2946  degrees of freedom
Residual deviance: 2594.7  on 2945  degrees of freedom
AIC: 2598.7

Number of Fisher Scoring iterations: 4