3-mers UUG 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=5.0967e-06

Neutral set average density: 0.0206923

Different set average density: 0.0194125

Presence of motif

           motif_present
gene_set    absent present
  different      2     992
  neutral        9    1944

Fisher's exact test: p=0.352919

Binomial GLM: p=0.288201

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-3.5238   0.0635   0.0961   0.0961   0.0961  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)     5.3753     0.3341  16.089   <2e-16 ***
differentTRUE   0.8313     0.7827   1.062    0.288    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 144.95  on 2946  degrees of freedom
Residual deviance: 143.63  on 2945  degrees of freedom
AIC: 147.63

Number of Fisher Scoring iterations: 9