3-mers UUG 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=1.04762e-12

Neutral set average density: 0.0302919

Different set average density: 0.0237022

Presence of motif

           motif_present
gene_set    absent present
  different    315     679
  neutral      464    1489

Fisher's exact test: p=5.20176e-06

Binomial GLM: p=4.16818e-06

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.6954  -1.5160   0.7366   0.7366   0.8731  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    1.16598    0.05317  21.930  < 2e-16 ***
differentTRUE -0.39793    0.08645  -4.603 4.17e-06 ***
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3404.0  on 2946  degrees of freedom
Residual deviance: 3383.1  on 2945  degrees of freedom
AIC: 3387.1

Number of Fisher Scoring iterations: 4