cisbp-rna Mex_5_M038 50 bases upstrand from poly(A) site

[CSV file]

Density of motif

t-test: p=6.79797e-11

Neutral set average density: 0.00397337

Different set average density: 0.00203219

Presence of motif

           motif_present
gene_set    absent present
  different    903      91
  neutral     1608     345

Fisher's exact test: p=2.26978e-10

Binomial GLM: p=1.46872e-09

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.6235  -0.6235  -0.6235  -0.4382   2.1867  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.53920    0.05933 -25.942  < 2e-16 ***
differentTRUE -0.75566    0.12495  -6.048 1.47e-09 ***
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2470.4  on 2946  degrees of freedom
Residual deviance: 2429.8  on 2945  degrees of freedom
AIC: 2433.8

Number of Fisher Scoring iterations: 4