cisbp-rna asd_1_M171 50 bases upstrand from poly(A) site

[CSV file]

Density of motif

t-test: p=0.238392

Neutral set average density: 0.00016385

Different set average density: 0.000261569

Presence of motif

           motif_present
gene_set    absent present
  different    981      13
  neutral     1937      16

Fisher's exact test: p=0.236453

Binomial GLM: p=0.208023

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.1623  -0.1623  -0.1283  -0.1283   3.0998  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -4.7963     0.2510 -19.107   <2e-16 ***
differentTRUE   0.4727     0.3754   1.259    0.208    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 325.75  on 2946  degrees of freedom
Residual deviance: 324.20  on 2945  degrees of freedom
AIC: 328.2

Number of Fisher Scoring iterations: 7