cisbp-rna asd_1_M171 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.103541

Neutral set average density: 0.000159754

Different set average density: 0.000126761

Presence of motif

           motif_present
gene_set    absent present
  different    932      62
  neutral     1803     150

Fisher's exact test: p=0.174541

Binomial GLM: p=0.152446

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.3998  -0.3998  -0.3998  -0.3589   2.3557  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -2.48657    0.08498 -29.261   <2e-16 ***
differentTRUE -0.22363    0.15628  -1.431    0.152    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 1524.3  on 2946  degrees of freedom
Residual deviance: 1522.2  on 2945  degrees of freedom
AIC: 1526.2

Number of Fisher Scoring iterations: 5