cisbp-rna asd_2_M046 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.0335771

Neutral set average density: 0.000235535

Different set average density: 0.000482897

Presence of motif

           motif_present
gene_set    absent present
  different    971      23
  neutral     1934      19

Fisher's exact test: p=0.00495395

Binomial GLM: p=0.00485884

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.2164  -0.2164  -0.1398  -0.1398   3.0439  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -4.6229     0.2305 -20.053  < 2e-16 ***
differentTRUE   0.8801     0.3125   2.816  0.00486 ** 
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 440.47  on 2946  degrees of freedom
Residual deviance: 432.57  on 2945  degrees of freedom
AIC: 436.57

Number of Fisher Scoring iterations: 7