cisbp-rna asd_2_M046 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.0145361

Neutral set average density: 0.000122888

Different set average density: 0.000342052

Presence of motif

           motif_present
gene_set    absent present
  different    977      17
  neutral     1941      12

Fisher's exact test: p=0.00882235

Binomial GLM: p=0.00633022

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.1857  -0.1857  -0.1110  -0.1110   3.1913  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -5.0861     0.2895  -17.57  < 2e-16 ***
differentTRUE   1.0348     0.3790    2.73  0.00633 ** 
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 325.75  on 2946  degrees of freedom
Residual deviance: 318.18  on 2945  degrees of freedom
AIC: 322.18

Number of Fisher Scoring iterations: 7