cisbp-rna asd_2_M113 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.0197191

Neutral set average density: 0.000174091

Different set average density: 0.000422535

Presence of motif

           motif_present
gene_set    absent present
  different    974      20
  neutral     1938      15

Fisher's exact test: p=0.00599722

Binomial GLM: p=0.0045411

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.2016  -0.2016  -0.1242  -0.1242   3.1206  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -4.8614     0.2592 -18.757  < 2e-16 ***
differentTRUE   0.9757     0.3438   2.838  0.00454 ** 
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 379.91  on 2946  degrees of freedom
Residual deviance: 371.79  on 2945  degrees of freedom
AIC: 375.79

Number of Fisher Scoring iterations: 7