cisbp-rna asd_2_M113 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.0191877

Neutral set average density: 9.21659e-05

Different set average density: 0.00028169

Presence of motif

           motif_present
gene_set    absent present
  different    980      14
  neutral     1944       9

Fisher's exact test: p=0.00773045

Binomial GLM: p=0.00863194

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.1684  -0.1684  -0.0961  -0.0961   3.2802  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -5.3753     0.3341 -16.089  < 2e-16 ***
differentTRUE   1.1268     0.4290   2.626  0.00863 ** 
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 269.06  on 2946  degrees of freedom
Residual deviance: 261.95  on 2945  degrees of freedom
AIC: 265.95

Number of Fisher Scoring iterations: 8