cisbp-rna asd_2_M262 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.0972388

Neutral set average density: 7.16846e-05

Different set average density: 0.000181087

Presence of motif

           motif_present
gene_set    absent present
  different    985       9
  neutral     1946       7

Fisher's exact test: p=0.0656927

Binomial GLM: p=0.0651462

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.1349  -0.1349  -0.0847  -0.0847   3.3560  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -5.6276     0.3786 -14.863   <2e-16 ***
differentTRUE   0.9322     0.5055   1.844   0.0651 .  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 198.82  on 2946  degrees of freedom
Residual deviance: 195.41  on 2945  degrees of freedom
AIC: 199.41

Number of Fisher Scoring iterations: 8