cisbp-rna asd_2_M262 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.825219

Neutral set average density: 1.6385e-05

Different set average density: 1.81087e-05

Presence of motif

           motif_present
gene_set    absent present
  different    986       8
  neutral     1937      16

Fisher's exact test: p=1

Binomial GLM: p=0.967144

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.1283  -0.1283  -0.1283  -0.1271   3.1056  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -4.79631    0.25102 -19.107   <2e-16 ***
differentTRUE -0.01791    0.43476  -0.041    0.967    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 278.71  on 2946  degrees of freedom
Residual deviance: 278.71  on 2945  degrees of freedom
AIC: 282.71

Number of Fisher Scoring iterations: 7