cisbp-rna cey_1_M081 50 bases upstrand from poly(A) site

[CSV file]

Density of motif

t-test: p=0.0544386

Neutral set average density: 8.19252e-05

Different set average density: 0.000221328

Presence of motif

           motif_present
gene_set    absent present
  different    983      11
  neutral     1945       8

Fisher's exact test: p=0.0477591

Binomial GLM: p=0.0318434

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.1492  -0.1492  -0.0906  -0.0906   3.3159  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -5.4936     0.3543 -15.506   <2e-16 ***
differentTRUE   1.0009     0.4663   2.146   0.0318 *  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 229.55  on 2946  degrees of freedom
Residual deviance: 224.89  on 2945  degrees of freedom
AIC: 228.89

Number of Fisher Scoring iterations: 8