cisbp-rna cey_1_M081 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.00800388

Neutral set average density: 0.000336918

Different set average density: 0.000434608

Presence of motif

           motif_present
gene_set    absent present
  different    808     186
  neutral     1661     292

Fisher's exact test: p=0.00960078

Binomial GLM: p=0.00895847

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.6437  -0.6437  -0.5691  -0.5691   1.9495  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.73842    0.06346 -27.396  < 2e-16 ***
differentTRUE  0.26961    0.10315   2.614  0.00896 ** 
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2612.8  on 2946  degrees of freedom
Residual deviance: 2606.1  on 2945  degrees of freedom
AIC: 2610.1

Number of Fisher Scoring iterations: 4